Mark DePristo 526b524c3c CombineVariants with new RodBinding. Bugfix ... -- CombineVariants now uses the new RodBinding syntax, -V / --variants. Passed all integration tests on first run -- Exposed gapping bug in the List<RodBinding<T>> system now fixed. ParserEngine now has a addRodBinding() that is called by RodBindingArgumentTypeDescriptor when it encounters each RodBinding. This allows the system to work with collection types that are recursively parsed by the system.		2011-08-07 20:16:51 -04:00
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arguments	Updating tools to use the RodBinding<T> syntax	2011-08-02 14:05:51 -04:00
datasources	Continuing progress towards RodBinding 1.0	2011-08-03 17:19:28 -04:00
executive	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
filters	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
iterators	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
refdata	Continuing progress towards RodBinding 1.0	2011-08-03 17:19:28 -04:00
report	GATKReport v0.2:	2011-08-03 00:24:47 -04:00
traversals	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
walkers	CombineVariants with new RodBinding. Bugfix	2011-08-07 20:16:51 -04:00
EngineFeaturesIntegrationTest.java	Continuing progress towards RodBinding 1.0	2011-08-03 17:19:28 -04:00
GenomeAnalysisEngineUnitTest.java	Fixing broken paths to the testdata directory throughout the codebase.	2011-06-29 17:36:47 -04:00
WalkerManagerUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00