Mark DePristo 526b524c3c CombineVariants with new RodBinding. Bugfix ... -- CombineVariants now uses the new RodBinding syntax, -V / --variants. Passed all integration tests on first run -- Exposed gapping bug in the List<RodBinding<T>> system now fixed. ParserEngine now has a addRodBinding() that is called by RodBindingArgumentTypeDescriptor when it encounters each RodBinding. This allows the system to work with collection types that are recursively parsed by the system.		2011-08-07 20:16:51 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	CombineVariants with new RodBinding. Bugfix	2011-08-07 20:16:51 -04:00