Joel Thibault 524d7ea306 Choose whether to keep program records based on Walker ... * Add keepProgramRecords argument * Make removeProgramRecords / keepProgramRecords override default		2012-08-03 09:54:16 -04:00
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DbsnpArgumentCollection.java	Don't serialize the GATKArgumentCollection for the GATKRunReports (which would have meant dealing with the new IntervalBindings). Also, forgot to remove a test that's no longer relevant to BED parsing.	2011-10-27 13:58:19 -04:00
GATKArgumentCollection.java	Choose whether to keep program records based on Walker	2012-08-03 09:54:16 -04:00
StandardVariantContextInputArgumentCollection.java	Don't serialize the GATKArgumentCollection for the GATKRunReports (which would have meant dealing with the new IntervalBindings). Also, forgot to remove a test that's no longer relevant to BED parsing.	2011-10-27 13:58:19 -04:00
ValidationExclusion.java	BCF2 cleanup	2012-06-26 15:28:33 -04:00