gatk-3.8/public/scala/qscript/org/broadinstitute/sting/queue/qscripts
Christopher Hartl 2c1b14d35e Mostly small changes to my own scala scripts: .vcf.gz compatibility for output files, smarter beagle generation, simple script to scatter-gather combine variants. Whole genome indel calling now uses the gold standard indel set. 2012-02-22 17:20:04 -05:00
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examples
lib Mostly small changes to my own scala scripts: .vcf.gz compatibility for output files, smarter beagle generation, simple script to scatter-gather combine variants. Whole genome indel calling now uses the gold standard indel set. 2012-02-22 17:20:04 -05:00
DataProcessingPipeline.scala
GATKResourcesBundle.scala
MethodsDevelopmentCallingPipeline.scala Turning off PHONE HOME option in the MDCP 2012-01-27 11:13:30 -05:00
PacbioProcessingPipeline.scala