hanna 521aa40baa Bring new command-line argument parsing system live. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@603 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-06 18:16:11 +00:00
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fourbasecaller	Bring new command-line argument parsing system live.	2009-05-06 18:16:11 +00:00
gatk	Acting on Kiran's suggestion to make the doc tag in the @Argument annotation required.x	2009-05-05 22:43:40 +00:00
illumina	Make output type identical to the bustard parser so the values can be easily swapped for one another.	2009-04-09 20:49:34 +00:00
indels	Start getting the cleaner working in Walker	2009-04-29 14:59:53 +00:00
samples	Added a sample xml marshaller / unmarshaller.	2009-04-07 22:28:16 +00:00
utils	For on and off-genotype primary bases, optionally compute the concordance of the secondary bases to their expected distributions. Each genotype has slightly different profiles.	2009-05-01 06:33:48 +00:00
ValidateSAM.java	generic declarations added here and there to eliminate a few annoying warnings; no consequential changes	2009-04-02 20:53:01 +00:00