hanna 1f0d852a48 Fix bug where alignments with indels would be busted because bwa reverses ... the read bases to undo a previous read base reverse that doesn't occur in the libbwa codepath. Also fixed some memory management issues. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1938 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-29 21:33:13 +00:00
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bwa_as_lib.sh	Initial version of BWA/C bindings. Still lots of squirrels roaming the code.	2009-10-28 21:37:49 +00:00
bwa_gateway.cpp	Fix bug where alignments with indels would be busted because bwa reverses	2009-10-29 21:33:13 +00:00
bwa_gateway.h	Fix bug where alignments with indels would be busted because bwa reverses	2009-10-29 21:33:13 +00:00
org_broadinstitute_sting_alignment_bwa_BWACAligner.cpp	Fix bug where alignments with indels would be busted because bwa reverses	2009-10-29 21:33:13 +00:00
org_broadinstitute_sting_alignment_bwa_BWACAligner.h	Initial version of BWA/C bindings. Still lots of squirrels roaming the code.	2009-10-28 21:37:49 +00:00