hanna 1f0d852a48 Fix bug where alignments with indels would be busted because bwa reverses ... the read bases to undo a previous read base reverse that doesn't occur in the libbwa codepath. Also fixed some memory management issues. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1938 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-29 21:33:13 +00:00
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bwa	Fix bug where alignments with indels would be busted because bwa reverses	2009-10-29 21:33:13 +00:00
SeparateQltout.cc	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00