Mark DePristo 51a3b6e25e No more makePrecisionFormatStringFromDenominatorValue ... -- As values in VCs are becoming their native Java types the VCFWriter needs to own proper float formating. -- Created a smart float formatter in VCFWriter, with unit tests -- Removed makePrecisionFormatStringFromDenominatorValue and its uses -- Fix broken contracted -- Refactored some code from the encoder to utils in BCF2 -- HaplotypeCaller's GenotypingEngine was using old version of subset to context. Replaced with a faster call that I think is correct. Ryan, please confirm.		2012-06-14 16:42:30 -04:00
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writer	No more makePrecisionFormatStringFromDenominatorValue	2012-06-14 16:42:30 -04:00
AlleleUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
GenotypeLikelihoodsUnitTest.java	Efficient Genotype object Intermediate commit	2012-06-14 16:42:24 -04:00
GenotypeUnitTest.java	Change interface to getNegLog10PError to getLog10PError	2011-11-18 21:07:30 -05:00
GenotypesContextUnitTest.java	Efficient Genotype object Intermediate commit	2012-06-14 16:42:24 -04:00
VCFJarClassLoadingUnitTest.java	Don't try to share BCF2 yet	2012-05-24 10:57:06 -04:00
VariantContextBenchmark.java	Efficient Genotype object Intermediate commit	2012-06-14 16:42:24 -04:00
VariantContextTestProvider.java	Finalizing BCF2 v2	2012-06-14 16:42:29 -04:00
VariantContextUnitTest.java	Efficient Genotype object Intermediate commit	2012-06-14 16:42:24 -04:00
VariantContextUtilsUnitTest.java	Finalizing new Genotype object and associated routines	2012-06-14 16:42:25 -04:00
VariantJEXLContextUnitTest.java	Killing the final versions of old new VariantContext interface	2011-11-18 21:32:43 -05:00