rpoplin 00453919d2 VQSR now only uses the valid polymorphic sites for training and truth sensitivity calculations. Any number of tracks whose ROD binding begins with the name truth can be used as truth sensitivity tracks. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5012 348d0f76-0448-11de-a6fe-93d51630548a		2011-01-18 20:48:19 +00:00
..
engine	Added a QFunction.jobLimitSeconds for experimentation, currently only used as the equivalent of bsub -W.	2011-01-14 19:45:03 +00:00
extensions	Removed stochasticity from IndelRealigner by random sampling using and seed based on the read list.	2011-01-07 22:03:36 +00:00
function	Added a QFunction.jobLimitSeconds for experimentation, currently only used as the equivalent of bsub -W.	2011-01-14 19:45:03 +00:00
library	Removed stochasticity from IndelRealigner by random sampling using and seed based on the read list.	2011-01-07 22:03:36 +00:00
pipeline	VQSR now only uses the valid polymorphic sites for training and truth sensitivity calculations. Any number of tracks whose ROD binding begins with the name truth can be used as truth sensitivity tracks.	2011-01-18 20:48:19 +00:00
util	Command lines for locally run Queue jobs no longer have to be escaped differently than bsub'ed jobs.	2011-01-10 21:07:29 +00:00
QCommandLine.scala	Updated PluginManager so that during testing Queue can dynamically compile and load separately multiple class directories into the same class loader.	2010-11-12 20:14:28 +00:00
QException.scala	Fix for Queue	2010-09-12 15:18:08 +00:00
QScript.scala	java changes:	2010-12-12 05:10:45 +00:00
QScriptManager.scala	Updated PluginManager so that during testing Queue can dynamically compile and load separately multiple class directories into the same class loader.	2010-11-12 20:14:28 +00:00
QSettings.scala	Updated PluginManager so that during testing Queue can dynamically compile and load separately multiple class directories into the same class loader.	2010-11-12 20:14:28 +00:00