corin 50fcebb0c4 Incorporates tearsheet and plot production with database access into standard pipeline. Note that the following dotkit packages must be run before the adpr will be correctly generated: ... R-2.10, Oracle-full-client, cx-oracle-5.0.2-python-2.6.5-oracle-full-client-11.1 This also removes the unused titv argument git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5024 348d0f76-0448-11de-a6fe-93d51630548a		2011-01-19 20:48:42 +00:00
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qscript	Incorporates tearsheet and plot production with database access into standard pipeline. Note that the following dotkit packages must be run before the adpr will be correctly generated:	2011-01-19 20:48:42 +00:00
src/org/broadinstitute/sting	VQSR now only uses the valid polymorphic sites for training and truth sensitivity calculations. Any number of tracks whose ROD binding begins with the name truth can be used as truth sensitivity tracks.	2011-01-18 20:48:19 +00:00
test/org/broadinstitute/sting/queue	Updated to reflect QD changes in r4984	2011-01-13 20:10:21 +00:00