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gatk-3.8/public/java/src/org/broadinstitute/sting/alignment
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Christopher Hartl 5d706c9e92 Merge branch 'master' of ssh://chartl@tin.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable 
Removing PSP and CSM

Conflicts:

	public/java/src/org/broadinstitute/sting/gatk/walkers/sequenom/CreateSequenomMask.java
	public/java/src/org/broadinstitute/sting/gatk/walkers/sequenom/PickSequenomProbes.java
 		2011-07-19 20:25:33 -04:00
..
bwa Merge branch 'master' of ssh://chartl@tin.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable 2011-07-19 20:25:33 -04:00
reference Merge branch 'master' of ssh://chartl@tin.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable 2011-07-19 20:25:33 -04:00
Aligner.java Merge branch 'master' of ssh://chartl@tin.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable 2011-07-19 20:25:33 -04:00
Alignment.java Merge branch 'master' of ssh://chartl@tin.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable 2011-07-19 20:25:33 -04:00
AlignmentValidationWalker.java Merge branch 'master' of ssh://chartl@tin.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable 2011-07-19 20:25:33 -04:00
AlignmentWalker.java Merge branch 'master' of ssh://chartl@tin.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable 2011-07-19 20:25:33 -04:00
CountBestAlignmentsWalker.java Merge branch 'master' of ssh://chartl@tin.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable 2011-07-19 20:25:33 -04:00
package-info.java BWA bindings and tests moved to public (was required for ValidationAmplicons) 2011-07-19 20:11:31 -04:00