Mark DePristo c97a361b5d Added realistic BandPassFilterUnitTest that ensures quality results for 1000G phase I VCF and NA12878 VCF ... -- Helped ID more bugs in the ActivityProfile, necessitating a new algorithm for popping off active regions. This new algorithm requires that at least maxRegionSize + prob. propagation distance states have been examined. This ensures that the incremental results are the same as you get reading in an entire profile and running getRegions on the full profile -- TODO is to remove incremental search start algorithm, as this is no longer necessary, and nicely eliminates a state variable I was always uncomfortable with		2013-01-27 14:10:08 -05:00
..
ActivityProfileStateUnitTest.java	Updating licenses of latest moved files	2013-01-26 13:46:52 -05:00
ActivityProfileUnitTest.java	Updating licenses of latest moved files	2013-01-26 13:46:52 -05:00
BandPassActivityProfileUnitTest.java	Added realistic BandPassFilterUnitTest that ensures quality results for 1000G phase I VCF and NA12878 VCF	2013-01-27 14:10:08 -05:00