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gatk-3.8/public/java/test/org/broadinstitute/sting
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Khalid Shakir 4ffb43079f Re-committing the following changes from Dec 18: 
Refactored interval specific arguments out of GATKArgumentCollection into InvtervalArgumentCollection such that it can be used in other CommandLinePrograms.
Updated SelectHeaders to print out full interval arguments.
Added RemoteFile.createUrl(Date expiration) to enable creation of presigned URLs for download over http: or file:.
 		2013-01-16 12:43:15 -05:00
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commandline Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
gatk Retire original TraverseActiveRegion, leaving only the new optimized version 2013-01-15 10:24:45 -05:00
jna Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
utils Re-committing the following changes from Dec 18: 2013-01-16 12:43:15 -05:00
AutoFormattingTimeUnitTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
BaseTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
MD5DB.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
MD5Mismatch.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
StingTextReporter.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
TestNGTestTransformer.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
WalkerTest.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00