Khalid Shakir 4ffb43079f Re-committing the following changes from Dec 18: ... Refactored interval specific arguments out of GATKArgumentCollection into InvtervalArgumentCollection such that it can be used in other CommandLinePrograms. Updated SelectHeaders to print out full interval arguments. Added RemoteFile.createUrl(Date expiration) to enable creation of presigned URLs for download over http: or file:.		2013-01-16 12:43:15 -05:00
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DoC	Fixing ParseLicense script for scala syntax	2013-01-10 18:24:24 -05:00
ClassFieldCache.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
CollectionUtils.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
EmailMessage.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
EmailSettings.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
Logging.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
PrimitiveOptionConversions.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
QJobReport.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
QJobsReporter.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
QScriptUtils.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
ReflectionUtils.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
RemoteFile.scala	Re-committing the following changes from Dec 18:	2013-01-16 12:43:15 -05:00
RemoteFileConverter.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
Retry.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
RetryException.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
ScalaCompoundArgumentTypeDescriptor.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
ShellUtils.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
StringFileConversions.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
SystemUtils.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
TextFormatUtils.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00
VCF_BAM_utilities.scala	Updating licenses for all scala files	2013-01-10 17:46:10 -05:00