Roger Zurawicki 4fd5630f6a Added ReadClipper Unit Test ... * Includes tests that include HardClip to Read and Reference Coords. * Changed ReadUtils.HardClipByReferenceCoordinates from private to protected to allow for testing		2011-09-28 23:13:50 -04:00
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net/sf	Removed annoying FastaSequenceIndexBuilderProgressListener infrastructure that was just a boolean switch on whether to print progress or not.	2011-07-27 22:06:23 -04:00
org/broadinstitute/sting	Added ReadClipper Unit Test	2011-09-28 23:13:50 -04:00