hanna 4fcee248f9 For Kristian: functions which, given a read, can uniquely identify the BAM file storing that read. ... Introducing this into the pile of code which peeks under the covers of the SAMDataSource in the hopes that this function can help to replace the others and provide a single path for crosstalk. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3103 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-31 20:46:44 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	For Kristian: functions which, given a read, can uniquely identify the BAM file storing that read.	2010-03-31 20:46:44 +00:00
test/org/broadinstitute/sting	Moved CoverageStatistics to core. This will be (soon) renamed DepthOfCoverage; so please use CoverageStatistics	2010-03-29 13:32:00 +00:00