hanna 4fbb6d05d0 Refactoring. Push the revisions to the common aligner interface down into ... the aligner base classes. Hack the managed implementation to support the new interface. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2103 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-20 17:08:09 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Refactoring. Push the revisions to the common aligner interface down into	2009-11-20 17:08:09 +00:00
test/org/broadinstitute/sting	The Unified Genotyper now sorts the sample names in the vcf that it outputs.	2009-11-20 16:13:18 +00:00