Matt Hanna 4fa5045e84 Abandoning classfileset/rootfileset approach due to difficulting managing ... classloading of bcel*.jar/ant-apache-bcel*.jar. Switching instead to manually specifying a minimal set of packages/classes to include in the vcf.jar via build.xml, and adding a unit test which creates a limited classloader only aware of vcf.jar and tribble.jar and tries to use it to load the core classes in the vcf jar. Hopefully third time's the charm.		2011-10-06 12:49:51 -04:00
..
R	Fixing units in queue job report Gantt plots	2011-09-12 09:01:34 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Abandoning classfileset/rootfileset approach due to difficulting managing	2011-10-06 12:49:51 -04:00
packages	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00