Eric Banks 4fa439d89e Move some classes back to public because they are used in the engine. Move some test classes to protected. We should have no more public->protected dependancies now		2013-01-09 11:06:10 -05:00
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gatk	Move some classes back to public because they are used in the engine. Move some test classes to protected. We should have no more public->protected dependancies now	2013-01-09 11:06:10 -05:00
utils	Resolve protected->public dependencies for BQSR by wrapping the BQSR-specific arguments in a new class.	2013-01-08 16:23:29 -05:00
package-info.java	build system overhaul	2012-05-17 15:16:29 -04:00