gatk-3.8/java
jmaguire 4f6d26849f Behold MultiSampleCaller!
Complete re-write of PoolCaller algorithm, now basically beta quality code. 

Improvements over PoolCaller include:

	- more correct strand test
	- fractional counts from genotypes (which means no individual lod threshold needed)
	- signifigantly cleaner code; first beta-quality code I've written since BaitDesigner so long ago.
	- faster, less likely to crash!	




git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1020 348d0f76-0448-11de-a6fe-93d51630548a
2009-06-16 20:03:24 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting Behold MultiSampleCaller! 2009-06-16 20:03:24 +00:00
test/org/broadinstitute/sting Fix TabularROD printing and testing so Aaron stops nagging me. 2009-06-16 15:49:26 +00:00