Eric Banks 1d97b4a191 Improved tail merging: now tails can be merged to branches that are not entirely reference. ... This is useful for e.g. cases where there are SNPs on insertions. Before tails were forced to be merged (incorrectly) only to a reference node, but now they can be merged to any path in the graph from which they directly branch. Also, I've transferred over Ryan's code to refuse to process kmer sizes such that there are non-unique kmers in the reference sequence with them.		2014-07-10 08:57:01 -04:00
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gatk-package-distribution	If passed -Pgsadev, don't build the distribution package.	2014-06-10 23:33:33 -04:00
gatk-queue-extensions-distribution	Disabled ExampleUG Queue Tests, fixed internal extensions dependency.	2014-05-27 16:16:53 -04:00
gatk-queue-package-distribution	If passed -Pgsadev, don't build the distribution package.	2014-06-10 23:33:33 -04:00
gatk-tools-protected	Improved tail merging: now tails can be merged to branches that are not entirely reference.	2014-07-10 08:57:01 -04:00
pom.xml	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00