Christopher Hartl 4f4a0fc38a Merge branch 'master' of ssh://gsa2/humgen/gsa-scr1/chartl/dev/git		2011-09-22 11:01:58 -04:00
..
R	Merge branch 'master' into sgintervals	2011-09-19 09:50:19 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	…
doc	…
java	Merge branch 'master' of ssh://gsa2/humgen/gsa-scr1/chartl/dev/git	2011-09-22 11:01:58 -04:00
packages	Removing some old cruft from the packages dir. Updating AnalyzeCovariates to include all Covariates.	2011-09-12 15:09:25 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Fixing exome specific arguments to the VQSR in the methods development calling pipeline	2011-09-21 20:26:28 -04:00
testdata	Adding bgzip vcf file for unit tests	2011-09-21 15:39:45 -04:00