Guillermo del Angel 3eef800889 Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable		2011-09-24 21:20:11 -04:00
..
CNV	Updating md5 because the file changed	2011-09-23 07:33:20 -04:00
annotator	SnpEff annotator now assigns a functional class to each effect and distinguishes between actual effects and mere modifiers.	2011-09-23 16:06:52 -04:00
beagle	Intermediate (but necessary) fix for Beagle walkers: if a marker is absent in the Beagle output files, but present in the input vcf, there's no reason why it should be omitted in the output vcf. Rather, the vc is written as is from the input vcf	2011-09-13 16:57:37 -04:00
coverage	…
diffengine	…
fasta	…
filters	…
genotyper	Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2011-09-24 21:20:11 -04:00
indels	…
phasing	…
qc	…
recalibration	…
validation	…
varianteval	SnpEff annotator now assigns a functional class to each effect and distinguishes between actual effects and mere modifiers.	2011-09-23 16:06:52 -04:00
variantrecalibration	…
variantutils	a) Cleanups/bug fixes to previous commit to CombineVariants.	2011-09-24 19:08:00 -04:00
BAQIntegrationTest.java	…
ClipReadsWalkersIntegrationTest.java	…
PileupWalkerIntegrationTest.java	…
PrintReadsIntegrationTest.java	…
PrintReadsWalkerUnitTest.java	…