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.gitignore
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Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.
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2014-03-05 09:30:29 -08:00 |
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LoadTimeInitializer.cc
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Removed scary warning messages for VectorPairHMM
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2014-05-06 10:59:24 -07:00 |
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LoadTimeInitializer.h
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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Makefile
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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Sandbox.cc
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Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.
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2014-03-05 09:30:29 -08:00 |
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Sandbox.h
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Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.
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2014-03-05 09:30:29 -08:00 |
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Sandbox.java
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Removed g_haplotype* global variables in native code so that it works
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2014-03-06 22:08:35 -08:00 |
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Sandbox_JNIHaplotypeDataHolderClass.h
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Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.
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2014-03-05 09:30:29 -08:00 |
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Sandbox_JNIReadDataHolderClass.h
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Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.
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2014-03-05 09:30:29 -08:00 |
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avx_function_instantiations.cc
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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baseline.cc
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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common_data_structure.h
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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define-double.h
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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define-float.h
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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define-sse-double.h
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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define-sse-float.h
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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headers.h
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Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.
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2014-03-05 09:30:29 -08:00 |
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jni_common.h
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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jnidebug.h
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Changed to delete[] where applicable
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2014-03-06 12:23:08 -08:00 |
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org_broadinstitute_sting_utils_pairhmm_DebugJNILoglessPairHMM.cc
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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org_broadinstitute_sting_utils_pairhmm_DebugJNILoglessPairHMM.h
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Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.
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2014-03-05 09:30:29 -08:00 |
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org_broadinstitute_sting_utils_pairhmm_VectorLoglessPairHMM.cc
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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org_broadinstitute_sting_utils_pairhmm_VectorLoglessPairHMM.h
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Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.
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2014-03-05 09:30:29 -08:00 |
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pairhmm-1-base.cc
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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pairhmm-template-kernel.cc
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Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.
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2014-03-05 09:30:29 -08:00 |
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pairhmm-template-main.cc
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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run.sh
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Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.
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2014-03-05 09:30:29 -08:00 |
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shift_template.c
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Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.
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2014-03-05 09:30:29 -08:00 |
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sse_function_instantiations.cc
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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template.h
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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utils.cc
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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utils.h
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Parallel version of the JNI for the PairHMM
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2014-05-02 19:12:48 -04:00 |
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