David Roazen 292037dfda Rev picard, sam-jdk, and tribble ... This is a necessary prerequisite for the org.broadinstitute.variant migration. -Picard and sam-jdk go from version 1.67.1197 to 1.84.1337 -Picard-private goes from version 2375 to 2662 -Tribble goes from version 119 to 1.84.1337 -RADICALLY trimmed down the list of classes we extract from Picard-private (jar goes from 326993 bytes to 6445 bytes!)		2013-02-01 13:51:30 -05:00
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com.google.code.caliper	Killed sonatype repository; it's failed me too many times at this point.	2011-06-09 16:07:02 +00:00
com.google.code.cofoja	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
edu.mit.broad	Rev picard, sam-jdk, and tribble	2013-02-01 13:51:30 -05:00
gov.nist	Adding Jama for Ryan.	2010-04-27 14:30:36 +00:00
net.sf	Rev picard, sam-jdk, and tribble	2013-02-01 13:51:30 -05:00
net.sf.gridscheduler	Switched GridEngine from looking from environment variable to using embedded jar.	2011-07-05 21:59:00 -04:00
net.sf.snpeff	SnpEff 2.0.5 support. Re-enabled SnpEff in the HybridSelectionPipeline.	2012-01-03 15:18:36 -05:00
org.broad	Rev picard, sam-jdk, and tribble	2013-02-01 13:51:30 -05:00