Eric Banks 4e5ff3d6f1 Bug fix for NPE in HC with --dbsnp argument. ... - I had added the framework in the VA engine but should not have hooked it up to the HC yet since the RefMetaDataTracker is always null. - Added contracts and docs to the relevant methods in the VA engine so that this doesn't happen in the future.		2013-02-05 21:59:19 -05:00
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src/org/broadinstitute/sting	Bug fix for NPE in HC with --dbsnp argument.	2013-02-05 21:59:19 -05:00
test/org/broadinstitute/sting	Fixes to BQSR for the --maximum_cycle_value argument.	2013-02-05 17:38:03 -05:00