gatk3的最后一个经典版本3.8

Eric Banks 4e5ff3d6f1 Bug fix for NPE in HC with --dbsnp argument. ... - I had added the framework in the VA engine but should not have hooked it up to the HC yet since the RefMetaDataTracker is always null. - Added contracts and docs to the relevant methods in the VA engine so that this doesn't happen in the future.		2013-02-05 21:59:19 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	Bug fix for NPE in HC with --dbsnp argument.	2013-02-05 21:59:19 -05:00
public	Bug fix for NPE in HC with --dbsnp argument.	2013-02-05 21:59:19 -05:00
settings	Rev picard, sam-jdk, and tribble	2013-02-01 13:51:30 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Move AWS keys to a resources subdirectory within the phonehome package	2013-01-31 11:56:34 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00