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jmaguire 4e4fd33584 First draft of actual pooled EM caller. 
Produces sane looking output on region of 1kG pilot1:

   CALL NA12813.SRP000031.2009_02.bam CC 0.609084 0.609084
   CALL NA12003.SRP000031.2009_02.bam CC 2.114234 2.114234 CCCCC
   CALL NA06994.SRP000031.2009_02.bam CC 0.910114 0.910114 C
   CALL NA18940.SRP000031.2009_02.bam CT 2.589749 0.910114 T
   CALL NA18555.SRP000031.2009_02.bam CC 0.609084 0.609084

Next up, eval vs. Baseline pilot1 calls and pilot3 deep-coverage truth.



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@526 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-04-24 13:43:41 +00:00
..
src/org/broadinstitute/sting First draft of actual pooled EM caller. 2009-04-24 13:43:41 +00:00
test/org/broadinstitute/sting Test class for MathUtils with a test for binomialProbability(). 2009-04-24 03:31:02 +00:00