Geraldine Van der Auwera 662919e5fe Correction to AlleleBalance doc ... Addresses https://github.com/broadinstitute/dsde-docs/issues/818 The equations representing the allele balance calculation were confusing and inconsistent with both the description text and the code. This doc change brings consistency and correctness. Also improves the AB by sample doc accordingly.		2016-04-25 12:10:01 -04:00
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VectorPairHMM	Update licenses	2016-03-05 01:09:43 -08:00
c	After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.	2014-05-19 17:36:41 -04:00
chainFiles	The contig is named MT not M in b36. Delivers PT68890442.	2014-04-08 10:03:47 -04:00
doc	Updated readme in public/doc to just point to the website	2015-03-12 11:52:48 -04:00
external-example	Update licenses	2016-03-05 01:09:43 -08:00
gatk-engine	Added run-time information to log output	2016-03-11 16:43:03 -05:00
gatk-queue	Update licenses	2016-03-05 01:09:43 -08:00
gatk-queue-extensions-generator	Update licenses	2016-03-05 01:09:43 -08:00
gatk-queue-extensions-public	Update licenses	2016-03-05 01:09:43 -08:00
gatk-root	Removes Dithering from Rank Sum Test	2016-02-29 11:45:27 -05:00
gatk-tools-public	Correction to AlleleBalance doc	2016-04-25 12:10:01 -04:00
gatk-utils	Changes edge case calculation for RankSumTest #1341	2016-04-22 14:41:05 -04:00
gsalib	Update pom versions to mark the start of GATK 3.6 development	2015-11-25 01:52:51 -05:00
java/config	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
package-tests	Update pom versions to mark the start of GATK 3.6 development	2015-11-25 01:52:51 -05:00
repo	Updated gatk so it compiles on java 8	2015-06-26 15:59:46 -04:00
src/main	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
pom.xml	Update pom versions to mark the start of GATK 3.6 development	2015-11-25 01:52:51 -05:00