gatk-3.8/public
Mark DePristo 4e42988c66 GSA-485: Remove repairVCFHeader from GATK codebase
-- Removed half-a*ssed attempt to automatically repair VCF files with bad headers, which allowed users to provide a replacement header overwriting the file's actually header on the fly.  Not a good idea, really.  Eric has promised to create a utility that walks through a VCF file and creates a meaningful header field based on the file's contents (if this ever becomes a priority)
2012-08-16 13:03:13 -04:00
..
R Fixed spelling error in BQSR.R 2012-08-13 10:01:33 -04:00
c
chainFiles
doc
java GSA-485: Remove repairVCFHeader from GATK codebase 2012-08-16 13:03:13 -04:00
keys Public-key authorization scheme to restrict use of NO_ET 2012-03-06 00:09:43 -05:00
packages Removed 'Walker' suffix from packages/GATKEngine.xml that were breaking the packaged release. 2012-07-23 16:32:31 -04:00
perl
scala Added setupRetry() to modify jobs when Queue is run with '-retry' and jobs are about to restart after an error. 2012-08-13 15:43:05 -04:00
testdata Reverting move of BQSR tests to public, as per DR's email 2012-07-19 10:02:05 -04:00