gatk-3.8/public/scala/test/org/broadinstitute/sting/queue/pipeline
Eric Banks 4e3780fd4f Updated md5 for PBPP 2012-07-17 15:47:43 -04:00
..
examples Refactored parsing of Rod/IntervalBinding. Queue S/G now uses all interval arguments passed to CommandLineGATK QFunctions including support for BED/tribble types, XL, ISR, and padding. 2012-06-27 01:15:22 -04:00
DataProcessingPipelineTest.scala fixing conflicts 2012-06-26 17:12:24 -04:00
PacbioProcessingPipelineTest.scala Updated md5 for PBPP 2012-07-17 15:47:43 -04:00
PipelineTest.scala MD5DB for integrationtest management now writes out a md5mismatches files for clean analysis 2012-06-14 16:42:27 -04:00
PipelineTestEvalSpec.scala No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice. 2012-01-08 12:11:55 -05:00
PipelineTestSpec.scala No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice. 2012-01-08 12:11:55 -05:00