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Ron Levine 645d418015 Changed hardcoded downsampling max/min coverage values to parameters 
Rename parameters using camel case and add to integration test

Correct documentation for maxReadsInRegionPerSample and minReadsPerAlignmentStart

Change the argument--minReadsPerAlignmentStart in the integration test from 50 to 5

'each genomic location' only pertains to minReadsPerAlignmentStart, not maxReadsInRegionPerSample
 		2014-10-09 17:09:26 -04:00
..
gatk-package-distribution Now passing in the path to the GATK directory to tests. 2014-09-02 01:40:59 +08:00
gatk-queue-extensions-distribution Now passing in the path to the GATK directory to tests. 2014-09-02 01:40:59 +08:00
gatk-queue-package-distribution Now passing in the path to the GATK directory to tests. 2014-09-02 01:40:59 +08:00
gatk-tools-protected Changed hardcoded downsampling max/min coverage values to parameters 2014-10-09 17:09:26 -04:00
pom.xml Update pom versions to mark the start of GATK 3.3 development 2014-07-17 12:09:33 -04:00