Samuel Friedman a8f70c891f Create GMM from model reports in VQSR		2017-04-26 16:02:06 -04:00
..
VectorPairHMM	Update pom versions to mark the start of GATK 3.8 development	2016-12-12 08:53:23 -05:00
c	After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.	2014-05-19 17:36:41 -04:00
chainFiles	The contig is named MT not M in b36. Delivers PT68890442.	2014-04-08 10:03:47 -04:00
doc	Updated readme in public/doc to just point to the website	2015-03-12 11:52:48 -04:00
external-example	Update pom versions to mark the start of GATK 3.8 development	2016-12-12 08:53:23 -05:00
gatk-engine	Add the Intel GKL as a dependency, and turn on the Intel inflater/deflater by default	2017-04-05 12:45:26 -04:00
gatk-queue	Update pom versions to mark the start of GATK 3.8 development	2016-12-12 08:53:23 -05:00
gatk-queue-extensions-generator	Update pom versions to mark the start of GATK 3.8 development	2016-12-12 08:53:23 -05:00
gatk-queue-extensions-public	Update pom versions to mark the start of GATK 3.8 development	2016-12-12 08:53:23 -05:00
gatk-root	Add the Intel GKL as a dependency, and turn on the Intel inflater/deflater by default	2017-04-05 12:45:26 -04:00
gatk-tools-public	minor bug fix in depth of coverage for partitioning by library + test (#1574)	2017-04-26 10:42:54 -04:00
gatk-utils	Create GMM from model reports in VQSR	2017-04-26 16:02:06 -04:00
gsalib	Update pom versions to mark the start of GATK 3.8 development	2016-12-12 08:53:23 -05:00
java/config	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
package-tests	Update pom versions to mark the start of GATK 3.8 development	2016-12-12 08:53:23 -05:00
repo	Move htsjdk and picard to version 2.3.0	2016-05-16 14:50:00 -04:00
src/main	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
pom.xml	Update pom versions to mark the start of GATK 3.8 development	2016-12-12 08:53:23 -05:00