kshakir 4d611e53e7 Passing the ADPR R script to FCPTest. ... Changed the FCP.q to use an InProcessFunction work around the -runDir issue GSA-420. Tested the FCPTest using the following dotkits and "ant clean pipelinetest -Dpipeline.run=run": - R-2.11 - Oracle-full-client - .cx-oracle-5.0.2-python-2.6.5-oracle-full-client-11.1 git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5029 348d0f76-0448-11de-a6fe-93d51630548a		2011-01-20 06:08:45 +00:00
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examples	Command lines for locally run Queue jobs no longer have to be escaped differently than bsub'ed jobs.	2011-01-10 21:07:29 +00:00
lib	Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires.	2010-12-15 03:33:36 +00:00
oneoffs	Another relevant qscript. I use this one to do thousands of variant recalibration jobs to search for optimal parameters.	2011-01-19 18:17:32 +00:00
playground	Passing the ADPR R script to FCPTest.	2011-01-20 06:08:45 +00:00