rpoplin e3962c0d13 VR integration tests are longer but much more useful. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4210 348d0f76-0448-11de-a6fe-93d51630548a		2010-09-03 15:50:19 +00:00
..
annotator	Moving supported tools to core	2010-08-26 13:56:19 +00:00
beagle	Moving supported tools to core	2010-08-26 13:56:19 +00:00
coverage	Updated tribble BED parsing code to use the official UCSC spec, and updated tests to match expected results.	2010-09-01 21:49:06 +00:00
fasta	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00
filters	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00
genotyper	Remove the check in the Unified Genotyper for hitting the max reads at locus value. Instead, simply add a flag to the INFO field if any of the samples has been downsampled. 95% hooked up.	2010-08-26 05:50:47 +00:00
indels	The battle is over. Picard is revved.	2010-09-03 05:28:01 +00:00
qc	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00
recalibration	Fix busted performance test (-outputBam has been deprecated in the BQ recalibrator in favor of -o)	2010-09-03 12:51:53 +00:00
sequenom	Office-mate courtesy: fixing Andrey's busted integration test	2010-08-26 02:00:06 +00:00
varianteval	Command-line argument tagging is in, and the ROD system is hacked slightly to support the new syntax	2010-08-25 03:47:57 +00:00
variantrecalibration	VR integration tests are longer but much more useful.	2010-09-03 15:50:19 +00:00
variantutils	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00
ClipReadsWalkersIntegrationTest.java	The battle is over. Picard is revved.	2010-09-03 05:28:01 +00:00
PileupWalkerIntegrationTest.java	Removed hard-coded pointers to references	2010-08-04 17:59:37 +00:00
PrintReadsWalkerUnitTest.java	Modifications to the output system for better interaction with @Output. Multiplexed arguments. More details in the Monday meeting.	2010-08-22 14:27:05 +00:00
VariantsToVCFIntegrationTest.java	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00