aaron 8a5f0b746e some cleanup for the output system. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3032 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-18 12:54:39 +00:00
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gatk/walkers	-Pushed base quals back down into SAMRecord; if -OQ is used, the SAMRecord quals get updated automatically	2010-03-17 16:00:10 +00:00
utils/report	some cleanup for the output system.	2010-03-18 12:54:39 +00:00