Mark DePristo 4d389a8234 Optimizations for HC infrastructure ... -- outgoingVerticesOf and incomingVerticesOf return a list not a set now, as the corresponding values must be unique since our super directed graph doesn't allow multiple edges between vertices -- Make DeBruijnGraph, SeqGraph, SeqVertex, and DeBruijnVertex all final -- Cache HashCode calculation in BaseVertex -- Better docs before the pruneGraph call		2013-04-08 12:47:49 -04:00
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gatk	Optimizations for HC infrastructure	2013-04-08 12:47:49 -04:00
utils	LD-based merging algorithm for nearby events in the haplotypes	2013-04-08 12:47:48 -04:00
package-info.java	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00