Mark DePristo 4d389a8234 Optimizations for HC infrastructure ... -- outgoingVerticesOf and incomingVerticesOf return a list not a set now, as the corresponding values must be unique since our super directed graph doesn't allow multiple edges between vertices -- Make DeBruijnGraph, SeqGraph, SeqVertex, and DeBruijnVertex all final -- Cache HashCode calculation in BaseVertex -- Better docs before the pruneGraph call		2013-04-08 12:47:49 -04:00
..
java	Optimizations for HC infrastructure	2013-04-08 12:47:49 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00