gatk3的最后一个经典版本3.8

Mark DePristo 4d389a8234 Optimizations for HC infrastructure ... -- outgoingVerticesOf and incomingVerticesOf return a list not a set now, as the corresponding values must be unique since our super directed graph doesn't allow multiple edges between vertices -- Make DeBruijnGraph, SeqGraph, SeqVertex, and DeBruijnVertex all final -- Cache HashCode calculation in BaseVertex -- Better docs before the pruneGraph call		2013-04-08 12:47:49 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Optimizations for HC infrastructure	2013-04-08 12:47:49 -04:00
public	Remove the capability of EventMap to emit symbolic alleles for unassembled events	2013-04-08 12:47:48 -04:00
settings	Don't allow users to specify keys and IDs that contain angle brackets or equals signs (not allowed in VCF spec).	2013-04-05 00:52:32 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Disable Contracts for Java for tests	2013-04-04 11:56:17 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00