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Geraldine Van der Auwera 4d20c71e09 Improvements to various gatkdocs 
- Make -rod required
    - Document that contaminationFile is currently not functional with HC
    - Document liftover process more clearly
    - Document VariantEval combinations of ST and VE that are incompatible
    - Added a caveat about using MVLR from HC and UG.
    - Added caveat about not using -mte with -nt
    - Clarified masking options
    - Fixed docs based on Erics comments
 		2013-08-10 10:01:31 -07:00
..
config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src Improvements to various gatkdocs 2013-08-10 10:01:31 -07:00
test moved SnpEffUtilUnitTest to public tree 2013-07-30 17:51:40 -04:00