Mauricio Carneiro 4748ae0a14 Bugfix: Softclips before Hardclips weren't being accounted for ... caught a bug in the hard clipper where it does not account for hard clipping softclipped bases in the resulting cigar string, if there is already a hard clipped base immediately after it. * updated unit test for hardClipSoftClippedBases with corresponding test-case.		2011-12-15 12:17:25 -05:00
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CigarStringTestPair.java	Reorganized the testing code and created ClipReadsTestUtils	2011-12-09 11:52:34 -05:00
ClipReadsTestUtils.java	Added unit test to catch Ryan's exception	2011-12-14 16:58:14 -05:00
ClippingOpUnitTest.java	Reorganized the testing code and created ClipReadsTestUtils	2011-12-09 11:52:34 -05:00
ReadClipperUnitTest.java	Bugfix: Softclips before Hardclips weren't being accounted for	2011-12-15 12:17:25 -05:00
TestParameter.java	Reorganized the testing code and created ClipReadsTestUtils	2011-12-09 11:52:34 -05:00