gatk-3.8/public/java
Mark DePristo 4d0e7b50ec ArtificialBAMBuilder utility class for creating streams of GATKSAMRecords with a variety of properties
--  Allows us to make a stream of reads or an index BAM file with read having the following properties (coming from n samples, of fixed read length and aligned to the genome with M operator, having N reads per alignment start, skipping N bases between each alignment start, starting at a given alignment start)
-- This stream can be handed back to the caller immediately, or written to an indexed BAM file
-- Update LocusIteratorByStateUnitTest to use this functionality (which was refactored from LIBS unit tests and ArtificialSAMUtils)
2013-01-16 15:29:59 -05:00
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config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src ArtificialBAMBuilder utility class for creating streams of GATKSAMRecords with a variety of properties 2013-01-16 15:29:59 -05:00
test ArtificialBAMBuilder utility class for creating streams of GATKSAMRecords with a variety of properties 2013-01-16 15:29:59 -05:00