hanna 4c5f640eb7 Tweak the arguments passed to the command-line arguments parser so that it fails less often for invalid arguments. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@560 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-29 14:36:27 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Tweak the arguments passed to the command-line arguments parser so that it fails less often for invalid arguments.	2009-04-29 14:36:27 +00:00
test/org/broadinstitute/sting	moved the test cases out of the GenomeAnalysisTK code and into a JUnit test case	2009-04-28 21:49:17 +00:00