ebanks 4c4d048f14 Moving VariantFiltration over to use VariantContext. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3048 348d0f76-0448-11de-a6fe-93d51630548a		2010-03-19 18:35:23 +00:00
..
alignment	adding the initial ROD for Reads support; more convenience methods in ReadMetaDataTracker to come.	2010-03-03 15:56:44 +00:00
analyzecovariates	Removed the StingException when mkdir fails for Sendu in AnalyzeCovariates. Incremental updates to VariantOptimizer.	2010-03-16 19:45:02 +00:00
gatk	Moving VariantFiltration over to use VariantContext.	2010-03-19 18:35:23 +00:00
oneoffprojects	Refactoring a few useful routines for detecting mendelian violations	2010-03-19 13:19:01 +00:00
playground	Bug fix for variant optimizer. Remember to close the PrintStreams it uses to output the cluster files.	2010-03-19 15:07:32 +00:00
utils	Fixing/cleaning up the vcf merge util	2010-03-19 15:13:32 +00:00