Mark DePristo 4c0f198d48 Potential fix for GSA-484: Incomplete writing of temp BCF when running CombineVariants in parallel ... -- Keep reading from BCF2 input stream when read(byte[]) returns < number of needed bytes -- It's possible (I think) that the failure in GSA-484 is due to multi-threading writing/reading of BCF2 records where the underlying stream is not yet flushed so read(byte[]) returns a partial result. No loops until we get all of the needed bytes or EOF is encounted		2012-08-17 11:49:01 -04:00
..
net/sf	FindBugs 'Maintainability' fixes	2012-08-16 15:53:06 -04:00
org/broadinstitute/sting	Potential fix for GSA-484: Incomplete writing of temp BCF when running CombineVariants in parallel	2012-08-17 11:49:01 -04:00