gatk-3.8/public/java
Mark DePristo 4c0f198d48 Potential fix for GSA-484: Incomplete writing of temp BCF when running CombineVariants in parallel
-- Keep reading from BCF2 input stream when read(byte[]) returns < number of needed bytes
-- It's possible (I think) that the failure in GSA-484 is due to multi-threading writing/reading of BCF2 records where the underlying stream is not yet flushed so read(byte[]) returns a partial result.  No loops until we get all of the needed bytes or EOF is encounted
2012-08-17 11:49:01 -04:00
..
config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src Potential fix for GSA-484: Incomplete writing of temp BCF when running CombineVariants in parallel 2012-08-17 11:49:01 -04:00
test Merge branch 'master' of ssh://gsa2.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable 2012-08-16 13:05:36 -04:00