gatk3的最后一个经典版本3.8

Mark DePristo 4c0f198d48 Potential fix for GSA-484: Incomplete writing of temp BCF when running CombineVariants in parallel ... -- Keep reading from BCF2 input stream when read(byte[]) returns < number of needed bytes -- It's possible (I think) that the failure in GSA-484 is due to multi-threading writing/reading of BCF2 records where the underlying stream is not yet flushed so read(byte[]) returns a partial result. No loops until we get all of the needed bytes or EOF is encounted		2012-08-17 11:49:01 -04:00
licensing	Revert unintentional license change	2012-08-09 17:10:47 -04:00
protected/java	FindBugs 'Efficiency' fixes	2012-08-16 15:40:52 -04:00
public	Potential fix for GSA-484: Incomplete writing of temp BCF when running CombineVariants in parallel	2012-08-17 11:49:01 -04:00
settings	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Convert external.build.dir and external.dist.dir back to paths	2012-08-15 23:04:10 -04:00
ivy.xml	Updating cofoja to the latest version	2012-08-09 16:36:18 -04:00