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gatk-3.8/protected/java/test/org/broadinstitute/sting/gatk/walkers
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David Roazen 4c0a3b182e Update MD5s to reflect version number change in the BAM header 
I've confirmed via a script that all of these differences only
involve the version number bump in the BAM headers and nothing
else:

< @HD   VN:1.0  GO:none SO:coordinate
---
> @HD   VN:1.4  GO:none SO:coordinate
 		2013-02-01 12:45:46 -05:00
..
annotator Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
beagle Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
bqsr Update MD5s to reflect version number change in the BAM header 2013-02-01 12:45:46 -05:00
compression/reducereads Adding new unit tests for RR. These tests took a frustratingly long time to get to pass, but now we have a framework for 2013-01-31 09:46:38 -05:00
diagnostics Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
diffengine Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
fasta Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
filters Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
genotyper Move BaseUtils back to the GATK by request, along with associated utility methods 2013-01-30 13:09:44 -05:00
haplotypecaller Use base List and Map types in the GenotypingEngineUnitTest. 2013-01-31 10:12:18 -05:00
indels Update MD5s to reflect version number change in the BAM header 2013-02-01 12:45:46 -05:00
phasing Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
validation Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
varianteval Move some VCF/VariantContext methods back to the GATK based on feedback 2013-01-29 16:56:55 -05:00
variantrecalibration Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
variantutils Move BaseUtils back to the GATK by request, along with associated utility methods 2013-01-30 13:09:44 -05:00