carneiro 4b9b767eb1 SelectVariants: now keeps the YAML stuff internal... it's there if you wanna use it, but won't be published anymore. Official parameter is the string for now. ... VariantEval: now sports the new MendelianViolation utility class. MendelianViolationClassifier: I noticed I had broken chartl's walker by changing VariantEval, so I took the liberty to modify it to use the new library too, though I kept modifications to a minimum, could have gone into full integration if this is a useful tool, but since it's in oneoffs, I decided not to go all out. MendelianViolation: Some getter methods were added for chartl and VariantEval. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5447 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-15 18:36:55 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	SelectVariants: now keeps the YAML stuff internal... it's there if you wanna use it, but won't be published anymore. Official parameter is the string for now.	2011-03-15 18:36:55 +00:00
test	A version of VQSRv2 that does contrastive clustering in two passes. The walkers will be renamed when they are moved to core.	2011-03-14 21:03:56 +00:00