gatk3的最后一个经典版本3.8

Yossi Farjoun 4b8b411b92 - Fixed a small bug in the printout of molten data in GenotypeConcordance ... Output didn't "mix-up" the genotypes, it outputed the same HET vs HET (e.g.) 3 times rather than the combinations of HET vs {HET, HOM, HOM_REF}, etc. This was only a problem in the text, _not_ the actual numbers, which were outputted correctly. - Updated MD5's after looking at diffs to verify that the change is what I expected.		2013-05-02 09:16:07 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	- Fixed a small bug in the printout of molten data in GenotypeConcordance	2013-05-02 09:16:07 -04:00
public	- Fixed a small bug in the printout of molten data in GenotypeConcordance	2013-05-02 09:16:07 -04:00
settings	Rev picard, sam-jdk, tribble, and variant jars to version 1.90.1442	2013-04-25 14:05:24 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
build.xml	Include cofoja jar in classpath when testing release jars	2013-04-30 22:16:58 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00